PH01000028G0810's details annotation
1.Annotation
ICBR annotation: remorin, putative, expressed
Blast result AT3G48940 : 1.40E-44
Blast annotation: Remorin family protein
2.Location
Scaffold: PH01000028
Strand: +
| Region | Start | End |
| gene | 556633 | 561981 |
| mRNA | 556633 | 561981 |
| exon | 556633 | 557291 |
| exon | 557620 | 557681 |
| exon | 559158 | 559259 |
| exon | 559725 | 559809 |
| exon | 559891 | 559978 |
| exon | 560359 | 560440 |
| exon | 560481 | 560486 |
| exon | 560599 | 561981 |
| CDS | 557057 | 557291 |
| CDS | 557620 | 557681 |
| CDS | 559158 | 559259 |
| CDS | 559725 | 559809 |
| CDS | 559891 | 559978 |
| CDS | 560359 | 560440 |
| CDS | 560481 | 560486 |
| CDS | 560599 | 560799 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03766.12 | Remorin_N | 48 | 79 |
| PF03763.12 | Remorin_C | 172 | 279 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.