PH01000028G1910's details annotation
1.Annotation
ICBR annotation: splicing factor 3B subunit 1, putative, expressed
Blast result AT5G64270 : 0.00E+00
Blast annotation: splicing factor, putative
2.Location
Scaffold: PH01000028
Strand: -
| Region | Start | End |
| gene | 1262462 | 1266813 |
| mRNA | 1262462 | 1266813 |
| exon | 1262462 | 1263931 |
| exon | 1264763 | 1265013 |
| exon | 1265087 | 1266813 |
| CDS | 1262543 | 1263931 |
| CDS | 1264763 | 1265013 |
| CDS | 1265087 | 1266389 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08920.9 | SF3b1 | 293 | 423 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Spliceosome | splicing factor 3B subunit 1 | ko03041 | K12828 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005488 | binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.