PH01000028G2160's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT1G73390 : 3.40E-40
Blast annotation: Endosomal targeting BRO1-like domain-containing protein
2.Location
Scaffold: PH01000028
Strand: -
| Region | Start | End |
| gene | 1386879 | 1389325 |
| mRNA | 1386879 | 1389325 |
| exon | 1386879 | 1388019 |
| exon | 1388395 | 1388455 |
| exon | 1388508 | 1388594 |
| exon | 1388634 | 1388692 |
| exon | 1388785 | 1388856 |
| exon | 1388939 | 1389325 |
| CDS | 1388003 | 1388019 |
| CDS | 1388395 | 1388455 |
| CDS | 1388508 | 1388594 |
| CDS | 1388634 | 1388692 |
| CDS | 1388785 | 1388856 |
| CDS | 1388939 | 1389191 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.