PH01000028G2550's details annotation
1.Annotation
ICBR annotation: transporter, major facilitator family, putative, expressed
Blast result AT5G64500 : 8.00E-159
Blast annotation: Major facilitator superfamily protein
2.Location
Scaffold: PH01000028
Strand: -
| Region | Start | End |
| gene | 1642549 | 1652808 |
| mRNA | 1642549 | 1652808 |
| exon | 1642549 | 1643383 |
| exon | 1643959 | 1644037 |
| exon | 1644322 | 1644450 |
| exon | 1644796 | 1644915 |
| exon | 1645500 | 1645613 |
| exon | 1645904 | 1645980 |
| exon | 1646789 | 1646880 |
| exon | 1647138 | 1647213 |
| exon | 1647993 | 1648061 |
| exon | 1648198 | 1648300 |
| exon | 1648443 | 1648517 |
| exon | 1649031 | 1649106 |
| exon | 1649217 | 1649321 |
| exon | 1650013 | 1650141 |
| exon | 1651306 | 1651590 |
| exon | 1651998 | 1652050 |
| exon | 1652385 | 1652808 |
| CDS | 1643262 | 1643383 |
| CDS | 1643959 | 1644037 |
| CDS | 1644322 | 1644450 |
| CDS | 1644796 | 1644915 |
| CDS | 1645500 | 1645613 |
| CDS | 1645904 | 1645980 |
| CDS | 1646789 | 1646880 |
| CDS | 1647138 | 1647213 |
| CDS | 1647993 | 1648061 |
| CDS | 1648198 | 1648300 |
| CDS | 1648443 | 1648517 |
| CDS | 1649031 | 1649106 |
| CDS | 1649217 | 1649321 |
| CDS | 1650013 | 1650141 |
| CDS | 1651306 | 1651590 |
| CDS | 1651998 | 1652050 |
| CDS | 1652385 | 1652399 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000745 | GMP synthase (glutamine-hydrolyzing) activity, pyrophosphatase_activity CMGC_GSK (from iTAK) protein-arginine_deiminase_activity |
| coexpression network | CFinderM000746 | CMGC_DYRK-YAK (from iTAK) TKL-Pl-6 (from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07690.15 | MFS_1 | 166 | 489 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016021 | integral to membrane |
| GO:0055085 | transmembrane transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.