Annotation of co-expression genes

PH01000029G1290's details annotation

1.Annotation

ICBR annotation: chloroplast ribonuclease III domain protein, putative, expressed

Blast result AT4G37510 : 0.00E+00
Blast annotation: Ribonuclease III family protein

2.Location

Scaffold: PH01000029
Strand: -

RegionStartEnd
gene812938822014
mRNA812938822014
exon812938813759
exon814254814353
exon814708814791
exon814911814990
exon815090815183
exon815266815357
exon816219816309
exon816495816596
exon817291817392
exon817598817689
exon817781817867
exon819372819572
exon819654819858
exon820719822014
CDS813667813759
CDS814254814353
CDS814708814791
CDS814911814990
CDS815090815183
CDS815266815357
CDS816219816309
CDS816495816596
CDS817291817392
CDS817598817689
CDS817781817867
CDS819372819572
CDS819654819858
CDS820719821488

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF03998.12Utp11511730

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003723RNA binding
GO:0004525ribonuclease III activity
GO:0006364rRNA processing
GO:0006396RNA processing
GO:0016075rRNA catabolic process
GO:0032040small-subunit processome

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.