PH01000029G1980's details annotation
1.Annotation
ICBR annotation: NHL25, putative, expressed
Blast result AT2G27080 : 3.20E-48
Blast annotation: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
2.Location
Scaffold: PH01000029
Strand: +
| Region | Start | End |
| gene | 1312713 | 1321954 |
| mRNA | 1312713 | 1321954 |
| exon | 1312713 | 1321954 |
| CDS | 1313507 | 1314385 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000738 | metal ion transport, metal ion binding, WRKY Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03168.12 | LEA_2 | 159 | 263 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.