PH01000030G0570's details annotation
1.Annotation
ICBR annotation: helix-loop-helix DNA-binding protein, putative
Blast result AT5G46690 : 4.30E-43
Blast annotation: beta HLH protein 71
2.Location
Scaffold: PH01000030
Strand: -
| Region | Start | End |
| gene | 341839 | 348571 |
| mRNA | 341839 | 348571 |
| exon | 341839 | 342064 |
| exon | 342141 | 342209 |
| exon | 342355 | 342456 |
| exon | 342553 | 342629 |
| exon | 344234 | 344347 |
| exon | 345878 | 346390 |
| exon | 347140 | 348571 |
| CDS | 341854 | 342064 |
| CDS | 342141 | 342209 |
| CDS | 342355 | 342456 |
| CDS | 342553 | 342629 |
| CDS | 344234 | 344347 |
| CDS | 345878 | 346390 |
| CDS | 347140 | 347340 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | bHLH |
| Transcription_Regulator(from PlantTFDB) | bHLH |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00010.25 | HLH | 34 | 85 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0046983 | protein dimerization activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.