PH01000031G0760's details annotation
1.Annotation
ICBR annotation: glutamine-dependent NAD, putative, expressed
Blast result AT1G55090 : 2.00E-110
Blast annotation: carbon-nitrogen hydrolase family protein
2.Location
Scaffold: PH01000031
Strand: -
| Region | Start | End |
| gene | 467118 | 475359 |
| mRNA | 467118 | 475359 |
| exon | 467118 | 467529 |
| exon | 468541 | 468636 |
| exon | 469418 | 469585 |
| exon | 469808 | 469984 |
| exon | 472446 | 472584 |
| exon | 472928 | 473063 |
| exon | 474073 | 474212 |
| exon | 475093 | 475359 |
| CDS | 467326 | 467529 |
| CDS | 468541 | 468636 |
| CDS | 469418 | 469585 |
| CDS | 469808 | 469984 |
| CDS | 472446 | 472584 |
| CDS | 472928 | 473063 |
| CDS | 474073 | 474212 |
| CDS | 475093 | 475145 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001256 | checkpoint_clamp_complex CK1_CK1-Pl (from iTAK) Nicotinate_and_nicotinamide_metabolism cell_cycle_checkpoint DNA_damage_checkpoint NAD+ synthase (glutamine-hydrolyzing) activity, NAD biosynthetic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02540.16 | NAD_synthase | 97 | 285 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Nicotinate and nicotinamide metabolism | NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1 ] | ko00760 | K01950 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003952 | NAD+ synthase (glutamine-hydrolyzing) activity |
| GO:0005524 | ATP binding |
| GO:0009435 | NAD biosynthetic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.