PH01000031G2430's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT3G23980 : 1.60E-97
Blast annotation: BLISTER
2.Location
Scaffold: PH01000031
Strand: +
| Region | Start | End |
| gene | 1541678 | 1549999 |
| mRNA | 1541678 | 1549999 |
| exon | 1541678 | 1543340 |
| exon | 1543690 | 1544341 |
| exon | 1544433 | 1544977 |
| exon | 1545513 | 1545632 |
| exon | 1546278 | 1546343 |
| exon | 1547024 | 1547134 |
| exon | 1547727 | 1547803 |
| exon | 1548118 | 1548185 |
| exon | 1548493 | 1548606 |
| exon | 1548696 | 1548877 |
| exon | 1549023 | 1549091 |
| exon | 1549358 | 1549513 |
| exon | 1549722 | 1549999 |
| CDS | 1543260 | 1543340 |
| CDS | 1543690 | 1544341 |
| CDS | 1544433 | 1544977 |
| CDS | 1545513 | 1545632 |
| CDS | 1546278 | 1546343 |
| CDS | 1547024 | 1547134 |
| CDS | 1547727 | 1547803 |
| CDS | 1548118 | 1548185 |
| CDS | 1548493 | 1548606 |
| CDS | 1548696 | 1548877 |
| CDS | 1549023 | 1549091 |
| CDS | 1549358 | 1549513 |
| CDS | 1549722 | 1549811 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.