PH01000033G1560's details annotation
1.Annotation
ICBR annotation: DUF260 domain containing protein, putative, expressed
Blast result AT1G07900 : 2.30E-46
Blast annotation: LOB domain-containing protein 1
2.Location
Scaffold: PH01000033
Strand: +
| Region | Start | End |
| gene | 987800 | 989495 |
| mRNA | 987800 | 989495 |
| exon | 987800 | 988204 |
| exon | 988327 | 989495 |
| CDS | 987920 | 988204 |
| CDS | 988327 | 988680 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000084 | cell wall macromolecule catabolic process, chitin catabolic process, WRKY Transcription_Regulator(from PlantTFDB) defense response to fungus, ammonium_transport ammonium_transmembrane_transport defense response to bacterium, metabolic process, chitinase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | LBD |
| Transcription_Regulator(from PlantTFDB) | LBD |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03195.13 | LOB | 49 | 146 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.