PH01000034G0070's details annotation
1.Annotation
ICBR annotation: lecithine cholesterol acyltransferase, putative, expressed
Blast result AT5G13640 : 0.00E+00
Blast annotation: phospholipid:diacylglycerol acyltransferase
2.Location
Scaffold: PH01000034
Strand: -
| Region | Start | End |
| gene | 44358 | 57732 |
| mRNA | 44358 | 57732 |
| exon | 44358 | 45487 |
| exon | 46187 | 46275 |
| exon | 49051 | 49506 |
| exon | 49705 | 49970 |
| exon | 50215 | 50247 |
| exon | 50790 | 51120 |
| exon | 53404 | 53687 |
| exon | 53820 | 54042 |
| exon | 56728 | 57732 |
| CDS | 45447 | 45487 |
| CDS | 46187 | 46275 |
| CDS | 49051 | 49506 |
| CDS | 49705 | 49970 |
| CDS | 50215 | 50247 |
| CDS | 50790 | 51120 |
| CDS | 53404 | 53687 |
| CDS | 53820 | 54042 |
| CDS | 56728 | 56951 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02450.14 | LCAT | 60 | 308 |
| PF02450.14 | LCAT | 412 | 574 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Glycerolipid metabolism | phospholipid:diacylglycerol acyltransferase [EC:2.3.1.158] | ko00561 | K00679 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006629 | lipid metabolic process |
| GO:0008374 | O-acyltransferase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.