Annotation of co-expression genes

PH01000036G1460's details annotation

1.Annotation

ICBR annotation: TBC domain containing protein, expressed

Blast result AT4G27100 : 2.00E-141
Blast annotation: Ypt/Rab-GAP domain of gyp1p superfamily protein

2.Location

Scaffold: PH01000036
Strand: -

RegionStartEnd
gene941038948712
mRNA941038948712
exon941038941942
exon942039942142
exon942404942542
exon943933944016
exon944096944341
exon944581944678
exon944803944908
exon945741945829
exon945965946087
exon946201946424
exon946920947023
exon947471947566
exon948179948712
CDS941517941942
CDS942039942142
CDS942404942542
CDS943933944016
CDS944096944341
CDS944581944678
CDS944803944908
CDS945741945829
CDS945965946087
CDS946201946424
CDS946920947023
CDS947471947566
CDS948179948304

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00566.17RabGAP-TBC170327
PF00786.27PBD488518

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005097Rab GTPase activator activity
GO:0005515protein binding
GO:0005622intracellular
GO:0032313regulation of Rab GTPase activity

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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