PH01000037G0330's details annotation
1.Annotation
ICBR annotation: sodium/calcium exchanger protein, putative, expressed
Blast result AT3G13320 : 2.00E-160
Blast annotation: cation exchanger 2
2.Location
Scaffold: PH01000037
Strand: -
| Region | Start | End |
| gene | 230181 | 240691 |
| mRNA | 230181 | 240691 |
| exon | 230181 | 230984 |
| exon | 231097 | 231128 |
| exon | 231329 | 231422 |
| exon | 231916 | 232032 |
| exon | 232223 | 232276 |
| exon | 232361 | 232477 |
| exon | 232855 | 232989 |
| exon | 233496 | 233708 |
| exon | 233787 | 233983 |
| exon | 238669 | 238697 |
| exon | 238767 | 238834 |
| exon | 239117 | 240691 |
| CDS | 230931 | 230984 |
| CDS | 231097 | 231128 |
| CDS | 231329 | 231422 |
| CDS | 231916 | 232032 |
| CDS | 232223 | 232276 |
| CDS | 232361 | 232477 |
| CDS | 232855 | 232989 |
| CDS | 233496 | 233708 |
| CDS | 233787 | 233983 |
| CDS | 238669 | 238697 |
| CDS | 238767 | 238834 |
| CDS | 239117 | 239335 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001036 | GT10 GlycosylTransferases Various_types_of_N-glycan_biosynthesis Fructose_and_mannose_metabolism Amino_sugar_and_nucleotide_sugar_metabolism protein glycosylation, Protein_processing_in_endoplasmic_reticulum Butirosin_and_neomycin_biosynthesis Streptomycin_biosynthesis calcium ion transport, hexokinase activity, calcium:proton_antiporter_activity UDP-glucose:glycoprotein_glucosyltransferase_activity fucosyltransferase_activity mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, |
| coexpression network | CFinderM001794 | NAK (from iTAK) vacuolar_proton-transporting_V-type_ATPase,_V0_domain proton-transporting V-type ATPase, V0 domain, ATP hydrolysis coupled proton transport, Phagosome Oxidative_phosphorylation hydrogen ion transmembrane transporter activity, calcium ion transport, myosin complex, calcium:proton_antiporter_activity motor activity, cation transmembrane transporter activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01699.23 | Na_Ca_ex | 75 | 230 |
| PF01699.23 | Na_Ca_ex | 267 | 404 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006812 | cation transport |
| GO:0006816 | calcium ion transport |
| GO:0008324 | cation transmembrane transporter activity |
| GO:0015369 | calcium:hydrogen antiporter activity |
| GO:0016021 | integral to membrane |
| GO:0055085 | transmembrane transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.