PH01000040G0140's details annotation
1.Annotation
ICBR annotation: RNA-binding protein Luc7-like, putative, expressed
Blast result AT5G17440 : 6.00E-101
Blast annotation: LUC7 related protein
2.Location
Scaffold: PH01000040
Strand: +
| Region | Start | End |
| gene | 95586 | 100962 |
| mRNA | 95586 | 100962 |
| exon | 95586 | 95789 |
| exon | 95962 | 96086 |
| exon | 96226 | 96394 |
| exon | 96485 | 96548 |
| exon | 97182 | 97261 |
| exon | 97402 | 97555 |
| exon | 98111 | 98172 |
| exon | 99157 | 99201 |
| exon | 99418 | 99476 |
| exon | 99577 | 99658 |
| exon | 100490 | 100503 |
| exon | 100562 | 100608 |
| exon | 100692 | 100916 |
| exon | 100947 | 100962 |
| CDS | 95643 | 95789 |
| CDS | 95962 | 96086 |
| CDS | 96226 | 96394 |
| CDS | 96485 | 96548 |
| CDS | 97182 | 97261 |
| CDS | 97402 | 97555 |
| CDS | 98111 | 98172 |
| CDS | 99157 | 99201 |
| CDS | 99418 | 99476 |
| CDS | 99577 | 99658 |
| CDS | 100490 | 100503 |
| CDS | 100562 | 100608 |
| CDS | 100692 | 100916 |
| CDS | 100947 | 100957 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03194.14 | LUC7 | 2 | 198 |
| PF03194.14 | LUC7 | 231 | 329 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.