Annotation of co-expression genes

PH01000040G0670's details annotation

1.Annotation

ICBR annotation: CESA5 - cellulose synthase, expressed

Blast result AT5G17420 : 0
Blast annotation: Cellulose synthase family protein

2.Location

Scaffold: PH01000040
Strand: -

RegionStartEnd
gene439017445128
mRNA439017445128
exon439017439822
exon440125440271
exon440362440558
exon440656440947
exon441041441253
exon441357441482
exon441597441734
exon441827442172
exon442257442303
exon442906443044
exon443753443927
exon444017444119
exon444210444348
exon444455444726
exon444819445128
CDS439238439822
CDS440125440271
CDS440362440558
CDS440656440947
CDS441041441253
CDS441357441482
CDS441597441734
CDS441827442172
CDS442257442303
CDS442906443044
CDS443753443927
CDS444017444119
CDS444210444348
CDS444455444726
CDS444819444899

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
GlycosylTransferasesGT2

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF14569.5zf-UDP2994
PF03552.13Cellulose_synt270303
PF03552.13Cellulose_synt332806

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005515protein binding
GO:0008270zinc ion binding
GO:0016020membrane
GO:0016760cellulose synthase (UDP-forming) activity
GO:0030244cellulose biosynthetic process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.