Annotation of co-expression genes

PH01000040G1230's details annotation

1.Annotation

ICBR annotation: OsSPL6 - SBP-box gene family member, expressed

Blast result AT2G47070 : 7.00E-177
Blast annotation: squamosa promoter binding protein-like 1

2.Location

Scaffold: PH01000040
Strand: +

RegionStartEnd
gene816810825960
mRNA816810825960
exon816810818449
exon819865820046
exon821214821516
exon821607821836
exon823590823664
exon823738823845
exon823921824038
exon824142824283
exon824398824545
exon824629825204
exon825526825960
CDS817902818449
CDS819865820046
CDS821214821516
CDS821607821836
CDS823590823664
CDS823738823845
CDS823921824038
CDS824142824283
CDS824398824545
CDS824629825204
CDS825526825945

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001387Alanine,_aspartate_and_glutamate_metabolism
SBP Transcription_Regulator(from PlantTFDB)

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Transcription_Regulator(from iTAK)SBP
Transcription_Regulator(from PlantTFDB)SBP

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF03110.13SBP137210

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003677DNA binding
GO:0005634nucleus

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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