PH01000041G0960's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT5G06350 : 6.00E-111
Blast annotation: ARM repeat superfamily protein
2.Location
Scaffold: PH01000041
Strand: +
| Region | Start | End |
| gene | 635629 | 644485 |
| mRNA | 635629 | 644485 |
| exon | 635629 | 635805 |
| exon | 635888 | 635960 |
| exon | 636052 | 636174 |
| exon | 636310 | 636479 |
| exon | 636862 | 637020 |
| exon | 637305 | 637451 |
| exon | 637631 | 637688 |
| exon | 638557 | 638861 |
| exon | 639437 | 639565 |
| exon | 639685 | 639798 |
| exon | 639885 | 639971 |
| exon | 640545 | 640667 |
| exon | 640804 | 640897 |
| exon | 640965 | 641167 |
| exon | 641475 | 641606 |
| exon | 641688 | 641819 |
| exon | 642679 | 643002 |
| exon | 643262 | 644485 |
| CDS | 635713 | 635805 |
| CDS | 635888 | 635960 |
| CDS | 636052 | 636174 |
| CDS | 636310 | 636479 |
| CDS | 636862 | 637020 |
| CDS | 637305 | 637451 |
| CDS | 637631 | 637688 |
| CDS | 638557 | 638861 |
| CDS | 639437 | 639565 |
| CDS | 639685 | 639798 |
| CDS | 639885 | 639971 |
| CDS | 640545 | 640667 |
| CDS | 640804 | 640897 |
| CDS | 640965 | 641167 |
| CDS | 641475 | 641606 |
| CDS | 641688 | 641819 |
| CDS | 642679 | 643002 |
| CDS | 643262 | 643396 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12333.7 | Ipi1_N | 166 | 227 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005488 | binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.