PH01000042G0980's details annotation
1.Annotation
ICBR annotation: placental protein 11 precursor, putative, expressed
Blast result AT4G17100 : 5.00E-120
Blast annotation: -
2.Location
Scaffold: PH01000042
Strand: -
| Region | Start | End |
| gene | 620188 | 624265 |
| mRNA | 620188 | 624265 |
| exon | 620188 | 620505 |
| exon | 620594 | 620665 |
| exon | 620769 | 621359 |
| exon | 621836 | 621907 |
| exon | 622318 | 622398 |
| exon | 622510 | 622608 |
| exon | 622770 | 622835 |
| exon | 622930 | 624265 |
| CDS | 620356 | 620505 |
| CDS | 620594 | 620665 |
| CDS | 620769 | 621359 |
| CDS | 621836 | 621907 |
| CDS | 622318 | 622398 |
| CDS | 622510 | 622608 |
| CDS | 622770 | 622835 |
| CDS | 622930 | 623088 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000452 | protein neddylation, Trihelix Transcription_Regulator(from PlantTFDB) cellular protein modification process, Ubiquitin_mediated_proteolysis small protein activating enzyme activity, calcium-dependent phospholipid binding, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF09412.9 | XendoU | 197 | 426 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016788 | hydrolase activity, acting on ester bonds |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.