PH01000042G2250's details annotation
1.Annotation
ICBR annotation: vacuolar-processing enzyme precursor, putative, expressed
Blast result AT1G62710 : 2.40E-63
Blast annotation: beta vacuolar processing enzyme
2.Location
Scaffold: PH01000042
Strand: +
| Region | Start | End |
| gene | 1438026 | 1440397 |
| mRNA | 1438026 | 1440397 |
| exon | 1438026 | 1438384 |
| exon | 1438449 | 1438655 |
| exon | 1439632 | 1439838 |
| exon | 1439978 | 1440397 |
| CDS | 1438298 | 1438384 |
| CDS | 1438449 | 1438655 |
| CDS | 1439632 | 1439838 |
| CDS | 1439978 | 1440160 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001246 | proteolysis, Protein_export C2H2 Transcription_Regulator(from PlantTFDB) serine-type peptidase activity, cysteine-type endopeptidase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01650.17 | Peptidase_C13 | 13 | 64 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004197 | cysteine-type endopeptidase activity |
| GO:0006508 | proteolysis |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.