PH01000043G0510's details annotation
1.Annotation
ICBR annotation: ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed
Blast result AT1G65650 : 3.00E-116
Blast annotation: Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1
2.Location
Scaffold: PH01000043
Strand: -
| Region | Start | End |
| gene | 360421 | 365035 |
| mRNA | 360421 | 365035 |
| exon | 360421 | 361810 |
| exon | 361897 | 361999 |
| exon | 362087 | 362133 |
| exon | 363451 | 363497 |
| exon | 364236 | 365035 |
| CDS | 361049 | 361810 |
| CDS | 361897 | 361999 |
| CDS | 362087 | 362133 |
| CDS | 363451 | 363497 |
| CDS | 364236 | 364266 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000136 | CPP Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01088.20 | Peptidase_C12 | 3 | 203 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004221 | ubiquitin thiolesterase activity |
| GO:0005622 | intracellular |
| GO:0006511 | ubiquitin-dependent protein catabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.