PH01000044G0160's details annotation
1.Annotation
ICBR annotation: SPX domain-containing protein, putative, expressed
Blast result AT2G45130 : 6.60E-69
Blast annotation: SPX domain gene 3
2.Location
Scaffold: PH01000044
Strand: +
| Region | Start | End |
| gene | 107085 | 110159 |
| mRNA | 107085 | 110159 |
| exon | 107085 | 109063 |
| exon | 109164 | 109311 |
| exon | 109385 | 110159 |
| CDS | 108836 | 109063 |
| CDS | 109164 | 109311 |
| CDS | 109385 | 109767 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03105.18 | SPX | 1 | 36 |
| PF03105.18 | SPX | 99 | 139 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.