PH01000045G1340's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT4G19110 : 1.00E-131
Blast annotation: Protein kinase superfamily protein
2.Location
Scaffold: PH01000045
Strand: -
| Region | Start | End |
| gene | 874158 | 881632 |
| mRNA | 874158 | 881632 |
| exon | 874158 | 874578 |
| exon | 874694 | 874823 |
| exon | 874903 | 874988 |
| exon | 875032 | 875191 |
| exon | 875388 | 875456 |
| exon | 875677 | 875785 |
| exon | 876086 | 876152 |
| exon | 876232 | 876284 |
| exon | 876364 | 876466 |
| exon | 876973 | 877111 |
| exon | 877206 | 877295 |
| exon | 877377 | 877445 |
| exon | 877728 | 877806 |
| exon | 878744 | 878864 |
| exon | 881026 | 881632 |
| CDS | 874319 | 874578 |
| CDS | 874694 | 874823 |
| CDS | 874903 | 874988 |
| CDS | 875032 | 875191 |
| CDS | 875388 | 875456 |
| CDS | 875677 | 875785 |
| CDS | 876086 | 876152 |
| CDS | 876232 | 876284 |
| CDS | 876364 | 876466 |
| CDS | 876973 | 877111 |
| CDS | 877206 | 877295 |
| CDS | 877377 | 877445 |
| CDS | 877728 | 877806 |
| CDS | 878744 | 878864 |
| CDS | 881026 | 881206 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00069.24 | Pkinase | 102 | 359 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004672 | protein kinase activity |
| GO:0004674 | protein serine/threonine kinase activity |
| GO:0005524 | ATP binding |
| GO:0006468 | protein phosphorylation |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.