PH01000045G2140's details annotation
1.Annotation
ICBR annotation: 39S ribosomal protein L47, mitochondrial precursor, putative, expressed
Blast result AT1G07830 : 1.80E-48
Blast annotation: ribosomal protein L29 family protein
2.Location
Scaffold: PH01000045
Strand: +
| Region | Start | End |
| gene | 1465273 | 1469130 |
| mRNA | 1465273 | 1469130 |
| exon | 1465273 | 1466080 |
| exon | 1466874 | 1467031 |
| exon | 1468031 | 1469130 |
| CDS | 1465912 | 1466080 |
| CDS | 1466874 | 1467031 |
| CDS | 1468031 | 1468138 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001274 | mitochondrial ribosome, protein folding, SNARE_interactions_in_vesicular_transport PHD Transcription_Regulator(from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF06984.12 | MRP-L47 | 37 | 124 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003735 | structural constituent of ribosome |
| GO:0005622 | intracellular |
| GO:0005761 | mitochondrial ribosome |
| GO:0005840 | ribosome |
| GO:0006412 | translation |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.