PH01000046G0800's details annotation
1.Annotation
ICBR annotation: eukaryotic translation initiation factor 3 subunit D, putative, expressed
Blast result AT4G20980 : 3.00E-172
Blast annotation: Eukaryotic translation initiation factor 3 subunit 7 (eIF-3)
2.Location
Scaffold: PH01000046
Strand: -
| Region | Start | End |
| gene | 628437 | 633725 |
| mRNA | 628437 | 633725 |
| exon | 628437 | 629625 |
| exon | 630928 | 630953 |
| exon | 631969 | 632026 |
| exon | 632529 | 632576 |
| exon | 632717 | 632821 |
| exon | 632929 | 633077 |
| exon | 633587 | 633725 |
| CDS | 628447 | 629625 |
| CDS | 630928 | 630953 |
| CDS | 631969 | 632026 |
| CDS | 632529 | 632576 |
| CDS | 632717 | 632821 |
| CDS | 632929 | 633077 |
| CDS | 633587 | 633638 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04667.16 | Endosulfine | 81 | 124 |
| PF05091.11 | eIF-3_zeta | 147 | 476 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| RNA transport | translation initiation factor 3 subunit D | ko03013 | K03251 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003743 | translation initiation factor activity |
| GO:0005737 | cytoplasm |
| GO:0005852 | eukaryotic translation initiation factor 3 complex |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.