PH01000047G0470's details annotation
1.Annotation
ICBR annotation: aberrant pollen transmission 1, putative, expressed
Blast result AT1G58250 : 0.00E+00
Blast annotation: Golgi-body localisation protein domain ;RNA pol II promoter Fmp27 protein domain
2.Location
Scaffold: PH01000047
Strand: +
| Region | Start | End |
| gene | 345625 | 366276 |
| mRNA | 345625 | 366276 |
| exon | 345625 | 346796 |
| exon | 346942 | 347053 |
| exon | 347141 | 347437 |
| exon | 347753 | 348015 |
| exon | 348820 | 349030 |
| exon | 349643 | 349816 |
| exon | 349890 | 349967 |
| exon | 350762 | 351007 |
| exon | 351585 | 351716 |
| exon | 352566 | 354668 |
| exon | 354938 | 356735 |
| exon | 356947 | 357050 |
| exon | 357854 | 358210 |
| exon | 358322 | 358440 |
| exon | 360459 | 360530 |
| exon | 361419 | 361509 |
| exon | 361954 | 362195 |
| exon | 362344 | 362542 |
| exon | 362775 | 362914 |
| exon | 363643 | 363715 |
| exon | 363950 | 364051 |
| exon | 364150 | 364521 |
| exon | 364684 | 364722 |
| exon | 364992 | 365376 |
| exon | 365910 | 366276 |
| CDS | 346648 | 346796 |
| CDS | 346942 | 347053 |
| CDS | 347141 | 347437 |
| CDS | 347753 | 348015 |
| CDS | 348820 | 349030 |
| CDS | 349643 | 349816 |
| CDS | 349890 | 349967 |
| CDS | 350762 | 351007 |
| CDS | 351585 | 351716 |
| CDS | 352566 | 354668 |
| CDS | 354938 | 356735 |
| CDS | 356947 | 357050 |
| CDS | 357854 | 358210 |
| CDS | 358322 | 358440 |
| CDS | 360459 | 360530 |
| CDS | 361419 | 361509 |
| CDS | 361954 | 362195 |
| CDS | 362344 | 362542 |
| CDS | 362775 | 362914 |
| CDS | 363643 | 363715 |
| CDS | 363950 | 364051 |
| CDS | 364150 | 364521 |
| CDS | 364684 | 364722 |
| CDS | 364992 | 365376 |
| CDS | 365910 | 366028 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF10351.8 | Apt1 | 1987 | 2250 |
| PF10351.8 | Apt1 | 2250 | 2487 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.