PH01000047G0760's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT5G12290 : 1.30E-36
Blast annotation: dgd1 suppressor 1
2.Location
Scaffold: PH01000047
Strand: +
| Region | Start | End |
| gene | 557668 | 564186 |
| mRNA | 557668 | 564186 |
| exon | 557668 | 561167 |
| exon | 562035 | 562107 |
| exon | 562193 | 562221 |
| exon | 562333 | 562456 |
| exon | 562675 | 562785 |
| exon | 563150 | 563250 |
| exon | 563336 | 564186 |
| CDS | 560878 | 561167 |
| CDS | 562035 | 562107 |
| CDS | 562193 | 562221 |
| CDS | 562333 | 562456 |
| CDS | 562675 | 562785 |
| CDS | 563150 | 563250 |
| CDS | 563336 | 563477 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08637.9 | NCA2 | 98 | 269 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.