Annotation of co-expression genes

PH01000047G1180's details annotation

1.Annotation

ICBR annotation: villin protein, putative, expressed

Blast result AT2G41740 : 0.00E+00
Blast annotation: villin 2

2.Location

Scaffold: PH01000047
Strand: +

RegionStartEnd
gene882767894828
mRNA882767894828
exon882767883281
exon884434884495
exon884625884693
exon884779885015
exon885112885289
exon885372885504
exon887191887350
exon887427887583
exon887663887766
exon887884888042
exon888333888401
exon888476888544
exon888703888840
exon889594889722
exon893027893177
exon893316893326
exon893421893561
exon893643893768
exon894742894828
CDS883269883281
CDS884434884495
CDS884625884693
CDS884779885015
CDS885112885289
CDS885372885504
CDS887191887350
CDS887427887583
CDS887663887766
CDS887884888042
CDS888333888401
CDS888476888544
CDS888703888840
CDS889594889722
CDS893027893177
CDS893316893326
CDS893421893561
CDS893643893768
CDS894742894813

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000927proton-transporting two-sector ATPase complex, catalytic domain,
Oxidative_phosphorylation
ATP metabolic process,
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances,
proton-transporting ATPase activity, rotational mechanism,
proton transport,
ATP hydrolysis coupled proton transport,
Phagosome
proton-transporting V-type ATPase, V1 domain,
glucose-6-phosphate isomerase activity,
proton-transporting ATP synthase complex, catalytic core F(1),
gluconeogenesis,
hydrogen ion transporting ATP synthase activity, rotational mechanism,
ATP synthesis coupled proton transport,
actin binding,
glycolysis,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00626.21Gelsolin3684
PF00626.21Gelsolin122193
PF00626.21Gelsolin245310
PF00626.21Gelsolin387460
PF00626.21Gelsolin510577

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003779actin binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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