PH01000047G1190's details annotation
1.Annotation
ICBR annotation: villin protein, putative, expressed
Blast result - : -
Blast annotation: -
2.Location
Scaffold: PH01000047
Strand: +
| Region | Start | End |
| gene | 894944 | 898233 |
| mRNA | 894944 | 898233 |
| exon | 894944 | 895884 |
| exon | 896599 | 896655 |
| exon | 896793 | 896891 |
| exon | 896973 | 897204 |
| exon | 897600 | 897856 |
| exon | 898222 | 898233 |
| CDS | 895729 | 895884 |
| CDS | 896599 | 896655 |
| CDS | 896793 | 896891 |
| CDS | 896973 | 897204 |
| CDS | 897600 | 897856 |
| CDS | 898222 | 898230 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000927 | proton-transporting two-sector ATPase complex, catalytic domain, Oxidative_phosphorylation ATP metabolic process, hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, proton-transporting ATPase activity, rotational mechanism, proton transport, ATP hydrolysis coupled proton transport, Phagosome proton-transporting V-type ATPase, V1 domain, glucose-6-phosphate isomerase activity, proton-transporting ATP synthase complex, catalytic core F(1), gluconeogenesis, hydrogen ion transporting ATP synthase activity, rotational mechanism, ATP synthesis coupled proton transport, actin binding, glycolysis, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.