Annotation of co-expression genes

PH01000048G0630's details annotation

1.Annotation

ICBR annotation: CK1_CaseinKinase_1.3 - CK1 includes the casein kinase 1 kinases, expressed

Blast result AT1G72710 : 0.00E+00
Blast annotation: casein kinase 1-like protein 2

2.Location

Scaffold: PH01000048
Strand: +

RegionStartEnd
gene448281454486
mRNA448281454486
exon448281448705
exon448794448834
exon449763449832
exon449914450062
exon450377450472
exon450572450642
exon451049451110
exon451265451328
exon451401451485
exon451556451682
exon451881451963
exon452056452116
exon452338452474
exon453037454486
CDS448630448705
CDS448794448834
CDS449763449832
CDS449914450062
CDS450377450472
CDS450572450642
CDS451049451110
CDS451265451328
CDS451401451485
CDS451556451682
CDS451881451963
CDS452056452116
CDS452338452474
CDS453037453333

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00069.24Pkinase10227

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004672protein kinase activity
GO:0004674protein serine/threonine kinase activity
GO:0005524ATP binding
GO:0006468protein phosphorylation
GO:0016772transferase activity, transferring phosphorus-containing groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.