PH01000049G0320's details annotation
1.Annotation
ICBR annotation: coatomer subunit beta-1, putative, expressed
Blast result AT4G31480 : 0.00E+00
Blast annotation: Coatomer, beta subunit
2.Location
Scaffold: PH01000049
Strand: -
| Region | Start | End |
| gene | 187554 | 193783 |
| mRNA | 187554 | 193783 |
| exon | 187554 | 188720 |
| exon | 189537 | 189622 |
| exon | 190271 | 190780 |
| exon | 191760 | 193211 |
| exon | 193335 | 193783 |
| CDS | 188516 | 188720 |
| CDS | 189537 | 189622 |
| CDS | 190271 | 190780 |
| CDS | 191760 | 193211 |
| CDS | 193335 | 193517 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001784 | RLK-Pelle_RLCK-V (from iTAK) COPI vesicle coat, membrane coat, Spliceosome |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01602.19 | Adaptin_N | 65 | 331 |
| PF07718.11 | Coatamer_beta_C | 532 | 670 |
| PF14806.5 | Coatomer_b_Cpla | 676 | 803 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005198 | structural molecule activity |
| GO:0005488 | binding |
| GO:0005737 | cytoplasm |
| GO:0006886 | intracellular protein transport |
| GO:0016192 | vesicle-mediated transport |
| GO:0030117 | membrane coat |
| GO:0030126 | COPI vesicle coat |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.