PH01000053G1060's details annotation
1.Annotation
ICBR annotation: ADP-ribosylation factor, putative, expressed
Blast result AT2G47170 : 4.60E-98
Blast annotation: Ras-related small GTP-binding family protein
2.Location
Scaffold: PH01000053
Strand: -
| Region | Start | End |
| gene | 619259 | 623256 |
| mRNA | 619259 | 623256 |
| exon | 619259 | 619835 |
| exon | 620398 | 620516 |
| exon | 620953 | 621117 |
| exon | 621176 | 621205 |
| exon | 621360 | 621430 |
| exon | 622080 | 623256 |
| CDS | 619733 | 619835 |
| CDS | 620398 | 620516 |
| CDS | 620953 | 621117 |
| CDS | 621176 | 621205 |
| CDS | 621360 | 621430 |
| CDS | 622080 | 622557 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000695 | STE_STE11 (from iTAK) RLK-Pelle_RLCK-VIIa-1 (from iTAK) SNARE_interactions_in_vesicular_transport |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00025.20 | Arf | 7 | 177 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005525 | GTP binding |
| GO:0005622 | intracellular |
| GO:0006886 | intracellular protein transport |
| GO:0007264 | small GTPase mediated signal transduction |
| GO:0015031 | protein transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.