PH01000055G2040's details annotation
1.Annotation
ICBR annotation: cyclic nucleotide-gated ion channel, putative, expressed
Blast result AT2G23980 : 0.00E+00
Blast annotation: cyclic nucleotide-gated channel 6
2.Location
Scaffold: PH01000055
Strand: +
| Region | Start | End |
| gene | 1396653 | 1406242 |
| mRNA | 1396653 | 1406242 |
| exon | 1396653 | 1397221 |
| exon | 1398256 | 1398296 |
| exon | 1400001 | 1400090 |
| exon | 1401119 | 1401701 |
| exon | 1402191 | 1402403 |
| exon | 1403064 | 1403371 |
| exon | 1404244 | 1404355 |
| exon | 1404440 | 1404676 |
| exon | 1404762 | 1406242 |
| CDS | 1397174 | 1397221 |
| CDS | 1398256 | 1398296 |
| CDS | 1400001 | 1400090 |
| CDS | 1401119 | 1401701 |
| CDS | 1402191 | 1402403 |
| CDS | 1403064 | 1403371 |
| CDS | 1404244 | 1404355 |
| CDS | 1404440 | 1404676 |
| CDS | 1404762 | 1405436 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00520.30 | Ion_trans | 148 | 472 |
| PF00027.28 | cNMP_binding | 568 | 656 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005216 | ion channel activity |
| GO:0005249 | voltage-gated potassium channel activity |
| GO:0005515 | protein binding |
| GO:0006811 | ion transport |
| GO:0006813 | potassium ion transport |
| GO:0016020 | membrane |
| GO:0055085 | transmembrane transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.