PH01000056G0630's details annotation
1.Annotation
ICBR annotation: TRAF-type zinc finger domain-containing protein 1, putative, expressed
Blast result AT1G09920 : 3.40E-54
Blast annotation: TRAF-type zinc finger-related
2.Location
Scaffold: PH01000056
Strand: +
| Region | Start | End |
| gene | 477398 | 480506 |
| mRNA | 477398 | 480506 |
| exon | 477398 | 478106 |
| exon | 478950 | 479085 |
| exon | 479495 | 479632 |
| exon | 479770 | 479891 |
| exon | 480196 | 480506 |
| CDS | 478069 | 478106 |
| CDS | 478950 | 479085 |
| CDS | 479495 | 479632 |
| CDS | 479770 | 479891 |
| CDS | 480196 | 480427 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.