Annotation of co-expression genes

PH01000056G0850's details annotation

1.Annotation

ICBR annotation: ferredoxin-dependent glutamate synthase, chloroplast precursor, putative, expressed

Blast result AT5G04140 : 0
Blast annotation: glutamate synthase 1

2.Location

Scaffold: PH01000056
Strand: -

RegionStartEnd
gene604456614186
mRNA604456614186
exon604456604868
exon604977605192
exon605278605388
exon606016606175
exon607393607538
exon608212608340
exon608435608527
exon609632609728
exon610311610381
exon610494610592
exon611224611355
exon611519611961
exon612526612856
exon613538614186
CDS604800604868
CDS604977605192
CDS605278605388
CDS606016606175
CDS607393607538
CDS608212608340
CDS608435608527
CDS609632609728
CDS610311610381
CDS610494610592
CDS611224611355
CDS611519611961
CDS612526612856
CDS613538613756

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00310.20GATase_293515
PF04898.13Glu_syn_central585753

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003824catalytic activity
GO:0006807nitrogen compound metabolic process
GO:0008152metabolic process
GO:0015930glutamate synthase activity
GO:0055114oxidation-reduction process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.