PH01000056G0980's details annotation
1.Annotation
ICBR annotation: F-box domain containing protein
Blast result AT3G54480 : 1.50E-50
Blast annotation: SKP1/ASK-interacting protein 5
2.Location
Scaffold: PH01000056
Strand: +
| Region | Start | End |
| gene | 697329 | 700001 |
| mRNA | 697329 | 700001 |
| exon | 697329 | 697987 |
| exon | 699212 | 699356 |
| exon | 699429 | 699507 |
| exon | 699641 | 699699 |
| exon | 699860 | 700001 |
| CDS | 697873 | 697987 |
| CDS | 699212 | 699356 |
| CDS | 699429 | 699507 |
| CDS | 699641 | 699699 |
| CDS | 699860 | 699989 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12937.6 | F-box-like | 26 | 63 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.