PH01000057G1610's details annotation
1.Annotation
ICBR annotation: SWIB/MDM2 domain containing protein, expressed
Blast result AT4G22360 : 2.40E-26
Blast annotation: SWIB complex BAF60b domain-containing protein
2.Location
Scaffold: PH01000057
Strand: +
| Region | Start | End |
| gene | 1113587 | 1117857 |
| mRNA | 1113587 | 1117857 |
| exon | 1113587 | 1115837 |
| exon | 1117386 | 1117491 |
| exon | 1117600 | 1117857 |
| CDS | 1115257 | 1115837 |
| CDS | 1117386 | 1117491 |
| CDS | 1117600 | 1117725 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000218 | SWI/SNF-BAF60b Transcription_Regulator(from iTAK) chloride transport, guanosine tetraphosphate metabolic process, voltage-gated chloride channel activity, cysteine-type endopeptidase inhibitor activity, ion channel activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | SWI/SNF-BAF60b |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08766.10 | DEK_C | 2 | 57 |
| PF02201.17 | SWIB | 209 | 266 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.