PH01000059G1940's details annotation
1.Annotation
ICBR annotation: ubiquitin family protein, putative, expressed
Blast result AT2G17200 : 2.00E-142
Blast annotation: ubiquitin family protein
2.Location
Scaffold: PH01000059
Strand: -
| Region | Start | End |
| gene | 1246670 | 1254278 |
| mRNA | 1246670 | 1254278 |
| exon | 1246670 | 1247566 |
| exon | 1248746 | 1248849 |
| exon | 1248951 | 1249043 |
| exon | 1249987 | 1250015 |
| exon | 1250150 | 1250208 |
| exon | 1250372 | 1250485 |
| exon | 1250575 | 1250864 |
| exon | 1250954 | 1251682 |
| exon | 1253624 | 1254278 |
| CDS | 1247132 | 1247566 |
| CDS | 1248746 | 1248849 |
| CDS | 1248951 | 1249043 |
| CDS | 1249987 | 1250015 |
| CDS | 1250150 | 1250208 |
| CDS | 1250372 | 1250485 |
| CDS | 1250575 | 1250864 |
| CDS | 1250954 | 1251682 |
| CDS | 1253624 | 1253879 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00240.22 | ubiquitin | 29 | 96 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Protein processing in endoplasmic reticulum | ubiquilin | ko04141 | K04523 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.