PH01000060G0430's details annotation
1.Annotation
ICBR annotation: triosephosphate isomerase, chloroplast precursor, putative, expressed
Blast result AT2G21170 : 1.00E-90
Blast annotation: triosephosphate isomerase
2.Location
Scaffold: PH01000060
Strand: +
| Region | Start | End |
| gene | 256101 | 260943 |
| mRNA | 256101 | 260943 |
| exon | 256101 | 257810 |
| exon | 257911 | 257937 |
| exon | 258849 | 258953 |
| exon | 259751 | 259836 |
| exon | 260074 | 260158 |
| exon | 260293 | 260425 |
| exon | 260514 | 260687 |
| exon | 260799 | 260943 |
| CDS | 257649 | 257810 |
| CDS | 257911 | 257937 |
| CDS | 258849 | 258953 |
| CDS | 259751 | 259836 |
| CDS | 260074 | 260158 |
| CDS | 260293 | 260425 |
| CDS | 260514 | 260687 |
| CDS | 260799 | 260836 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00121.17 | TIM | 56 | 257 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0004807 | triose-phosphate isomerase activity |
| GO:0008152 | metabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.