PH01000063G1430's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT3G51980 : 1.60E-69
Blast annotation: ARM repeat superfamily protein
2.Location
Scaffold: PH01000063
Strand: +
| Region | Start | End |
| gene | 970623 | 976910 |
| mRNA | 970623 | 976910 |
| exon | 970623 | 971077 |
| exon | 971450 | 971541 |
| exon | 972016 | 972166 |
| exon | 972797 | 972924 |
| exon | 973377 | 973538 |
| exon | 973611 | 973793 |
| exon | 974117 | 974451 |
| exon | 974594 | 975119 |
| exon | 976060 | 976260 |
| exon | 976764 | 976910 |
| CDS | 970780 | 971077 |
| CDS | 971450 | 971541 |
| CDS | 972016 | 972166 |
| CDS | 972797 | 972924 |
| CDS | 973377 | 973538 |
| CDS | 973611 | 973793 |
| CDS | 974117 | 974451 |
| CDS | 974594 | 975119 |
| CDS | 976060 | 976260 |
| CDS | 976764 | 976871 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000169 | peroxisomal membrane, protein_import_into_peroxisome_matrix negative_regulation_of_transcription,_DNA-templated transcription_corepressor_activity Galactose_metabolism Peroxisome Pentose_and_glucuronate_interconversions Pyruvate_metabolism Glycerolipid_metabolism Fructose_and_mannose_metabolism |
| coexpression network | CFinderM001216 | Protein_processing_in_endoplasmic_reticulum isomerase activity, glycerol ether metabolic process, protein disulfide oxidoreductase activity, unfolded protein binding, cell redox homeostasis, protein folding, endoplasmic reticulum, electron carrier activity, Protein_export |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08609.9 | Fes1 | 91 | 182 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Protein processing in endoplasmic reticulum | nucleotide exchange factor SIL1 | ko04141 | K14001 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005488 | binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.