PH01000065G0400's details annotation
1.Annotation
ICBR annotation: auxin efflux carrier component, putative, expressed
Blast result AT1G73590 : 0.00E+00
Blast annotation: Auxin efflux carrier family protein
2.Location
Scaffold: PH01000065
Strand: -
| Region | Start | End |
| gene | 290027 | 293689 |
| mRNA | 290027 | 293689 |
| exon | 290027 | 290309 |
| exon | 290755 | 290836 |
| exon | 291078 | 291154 |
| exon | 291483 | 291640 |
| exon | 291732 | 291817 |
| exon | 291941 | 292217 |
| exon | 292303 | 293689 |
| CDS | 290292 | 290309 |
| CDS | 290755 | 290836 |
| CDS | 291078 | 291154 |
| CDS | 291483 | 291640 |
| CDS | 291732 | 291817 |
| CDS | 291941 | 292217 |
| CDS | 292303 | 293422 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03547.17 | Mem_trans | 9 | 575 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016021 | integral to membrane |
| GO:0055085 | transmembrane transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.