PH01000065G1070's details annotation
1.Annotation
ICBR annotation: myosin, putative, expressed
Blast result AT1G08730 : 0.00E+00
Blast annotation: Myosin family protein with Dil domain
2.Location
Scaffold: PH01000065
Strand: -
| Region | Start | End |
| gene | 647480 | 664284 |
| mRNA | 647480 | 664284 |
| exon | 647480 | 648542 |
| exon | 648641 | 648723 |
| exon | 648799 | 648879 |
| exon | 648976 | 649032 |
| exon | 649394 | 649450 |
| exon | 649823 | 649922 |
| exon | 650029 | 650099 |
| exon | 650547 | 650753 |
| exon | 650831 | 650986 |
| exon | 651333 | 651413 |
| exon | 651513 | 651563 |
| exon | 651658 | 651769 |
| exon | 652003 | 652142 |
| exon | 652300 | 652521 |
| exon | 652698 | 652796 |
| exon | 653102 | 653221 |
| exon | 653316 | 653521 |
| exon | 653604 | 653781 |
| exon | 654092 | 654152 |
| exon | 654270 | 654379 |
| exon | 654497 | 654628 |
| exon | 654779 | 654949 |
| exon | 655033 | 655159 |
| exon | 655307 | 655344 |
| exon | 656859 | 656894 |
| exon | 658254 | 658355 |
| exon | 658469 | 658526 |
| exon | 658607 | 658708 |
| exon | 658815 | 658961 |
| exon | 659049 | 659185 |
| exon | 659267 | 659416 |
| exon | 659535 | 659694 |
| exon | 659805 | 659863 |
| exon | 659949 | 660105 |
| exon | 660186 | 660451 |
| exon | 663294 | 663437 |
| exon | 663529 | 663657 |
| exon | 663882 | 664284 |
| CDS | 648419 | 648542 |
| CDS | 648641 | 648723 |
| CDS | 648799 | 648879 |
| CDS | 648976 | 649032 |
| CDS | 649394 | 649450 |
| CDS | 649823 | 649922 |
| CDS | 650029 | 650099 |
| CDS | 650547 | 650753 |
| CDS | 650831 | 650986 |
| CDS | 651333 | 651413 |
| CDS | 651513 | 651563 |
| CDS | 651658 | 651769 |
| CDS | 652003 | 652142 |
| CDS | 652300 | 652521 |
| CDS | 652698 | 652796 |
| CDS | 653102 | 653221 |
| CDS | 653316 | 653521 |
| CDS | 653604 | 653781 |
| CDS | 654092 | 654152 |
| CDS | 654270 | 654379 |
| CDS | 654497 | 654628 |
| CDS | 654779 | 654949 |
| CDS | 655033 | 655159 |
| CDS | 655307 | 655344 |
| CDS | 656859 | 656894 |
| CDS | 658254 | 658355 |
| CDS | 658469 | 658526 |
| CDS | 658607 | 658708 |
| CDS | 658815 | 658961 |
| CDS | 659049 | 659185 |
| CDS | 659267 | 659416 |
| CDS | 659535 | 659694 |
| CDS | 659805 | 659863 |
| CDS | 659949 | 660105 |
| CDS | 660186 | 660451 |
| CDS | 663294 | 663437 |
| CDS | 663529 | 663657 |
| CDS | 663882 | 663884 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02736.18 | Myosin_N | 10 | 46 |
| PF00063.20 | Myosin_head | 133 | 772 |
| PF00612.26 | IQ | 837 | 856 |
| PF00612.26 | IQ | 885 | 904 |
| PF01843.18 | DIL | 1295 | 1399 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003774 | motor activity |
| GO:0005515 | protein binding |
| GO:0005524 | ATP binding |
| GO:0016459 | myosin complex |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.