PH01000066G1320's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT1G35660 : 0.00E+00
Blast annotation: -
2.Location
Scaffold: PH01000066
Strand: +
| Region | Start | End |
| gene | 902064 | 910785 |
| mRNA | 902064 | 910785 |
| exon | 902064 | 903478 |
| exon | 904313 | 904520 |
| exon | 904597 | 905038 |
| exon | 905228 | 905324 |
| exon | 906103 | 906303 |
| exon | 906431 | 906675 |
| exon | 906750 | 906824 |
| exon | 906918 | 907191 |
| exon | 907222 | 909308 |
| exon | 909824 | 910785 |
| CDS | 903388 | 903478 |
| CDS | 904313 | 904520 |
| CDS | 904597 | 905038 |
| CDS | 905228 | 905324 |
| CDS | 906103 | 906303 |
| CDS | 906431 | 906675 |
| CDS | 906750 | 906824 |
| CDS | 906918 | 907191 |
| CDS | 907222 | 909308 |
| CDS | 909824 | 910111 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001040 | proteasomal ubiquitin-dependent protein catabolic process, nucleotide-excision repair, chloride transport, damaged DNA binding, ion channel activity, voltage-gated chloride channel activity, Nucleotide_excision_repair |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.