PH01000068G0620's details annotation
1.Annotation
ICBR annotation: serine/threonine-protein kinase Haspin, putative, expressed
Blast result AT1G09450 : 2.40E-96
Blast annotation: Protein kinase superfamily protein
2.Location
Scaffold: PH01000068
Strand: +
| Region | Start | End |
| gene | 422565 | 430446 |
| mRNA | 422565 | 430446 |
| exon | 422565 | 422632 |
| exon | 423730 | 423831 |
| exon | 424168 | 424230 |
| exon | 424896 | 425455 |
| exon | 425639 | 425762 |
| exon | 425832 | 425947 |
| exon | 426211 | 426322 |
| exon | 427054 | 427149 |
| exon | 427262 | 427354 |
| exon | 428582 | 428633 |
| exon | 428816 | 428886 |
| exon | 428964 | 429016 |
| exon | 429282 | 429354 |
| exon | 429457 | 430446 |
| CDS | 422600 | 422632 |
| CDS | 423730 | 423831 |
| CDS | 424168 | 424230 |
| CDS | 424896 | 425455 |
| CDS | 425639 | 425762 |
| CDS | 425832 | 425947 |
| CDS | 426211 | 426322 |
| CDS | 427054 | 427149 |
| CDS | 427262 | 427354 |
| CDS | 428582 | 428633 |
| CDS | 428816 | 428886 |
| CDS | 428964 | 429016 |
| CDS | 429282 | 429354 |
| CDS | 429457 | 429606 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12330.7 | Haspin_kinase | 450 | 534 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.