Annotation of co-expression genes

PH01000068G0660's details annotation

1.Annotation

ICBR annotation: kinase, putative, expressed

Blast result AT3G06483 : 5.00E-154
Blast annotation: pyruvate dehydrogenase kinase

2.Location

Scaffold: PH01000068
Strand: +

RegionStartEnd
gene463007466934
mRNA463007466934
exon463007463411
exon464212464473
exon464941465121
exon465343465490
exon466239466443
exon466638466934
CDS463175463411
CDS464212464473
CDS464941465121
CDS465343465490
CDS466239466443
CDS466638466696

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000561GT4 GlycosylTransferases
NADP_biosynthetic_process
phosphorylation,
NAD+ kinase activity,
peptidyl-prolyl cis-trans isomerase activity,
coexpression networkCFinderM000773GT4 GlycosylTransferases
phosphorylation,
magnesium_ion_transport
peptidyl-prolyl cis-trans isomerase activity,
magnesium_ion_transmembrane_transporter_activity

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF10436.8BCDHK_Adom324185
PF02518.25HATPase_c231352

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005524ATP binding
GO:0016310phosphorylation
GO:0016772transferase activity, transferring phosphorus-containing groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.