PH01000068G0760's details annotation
1.Annotation
ICBR annotation: ribosomal protein L6, putative, expressed
Blast result AT1G33140 : 2.00E-77
Blast annotation: Ribosomal protein L6 family
2.Location
Scaffold: PH01000068
Strand: -
| Region | Start | End |
| gene | 521741 | 526455 |
| mRNA | 521741 | 526455 |
| exon | 521741 | 522165 |
| exon | 522420 | 522610 |
| exon | 523279 | 523400 |
| exon | 524372 | 524454 |
| exon | 525008 | 525130 |
| exon | 525986 | 526455 |
| CDS | 521983 | 522165 |
| CDS | 522420 | 522610 |
| CDS | 523279 | 523400 |
| CDS | 524372 | 524454 |
| CDS | 525008 | 525130 |
| CDS | 525986 | 526321 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00347.22 | Ribosomal_L6 | 3 | 77 |
| PF00347.22 | Ribosomal_L6 | 89 | 168 |
| PF00687.20 | Ribosomal_L1 | 243 | 340 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Ribosome | large subunit ribosomal protein L9e | ko03011 | K02940 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003723 | RNA binding |
| GO:0003735 | structural constituent of ribosome |
| GO:0005622 | intracellular |
| GO:0005840 | ribosome |
| GO:0006412 | translation |
| GO:0015934 | large ribosomal subunit |
| GO:0019843 | rRNA binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.