Annotation of co-expression genes

PH01000069G1210's details annotation

1.Annotation

ICBR annotation: auxin response factor 18, putative, expressed

Blast result AT4G30080 : 7.70E-73
Blast annotation: auxin response factor 16

2.Location

Scaffold: PH01000069
Strand: -

RegionStartEnd
gene877299881409
mRNA877299881409
exon877299878228
exon878349881409
CDS877305878228
CDS878349878420

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipphe-miR160b  
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000143pyruvate metabolic process,
pyruvate, phosphate dikinase activity,
phosphorylation,
Pyruvate_metabolism
Carbon_fixation_in_photosynthetic_organisms
response to hormone stimulus,
ubiquitin ligase complex,
protein ubiquitination,
coexpression networkCFinderM000695STE_STE11 (from iTAK)
RLK-Pelle_RLCK-VIIa-1 (from iTAK)
SNARE_interactions_in_vesicular_transport

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF06507.12Auxin_resp124

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003677DNA binding
GO:0005634nucleus
GO:0006355regulation of transcription, DNA-dependent
GO:0009725response to hormone stimulus
GO:0046983protein dimerization activity

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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