PH01000070G0530's details annotation
1.Annotation
ICBR annotation: ternary complex factor MIP1, putative, expressed
Blast result AT1G21060 : 3.10E-30
Blast annotation: Protein of unknown function, DUF547
2.Location
Scaffold: PH01000070
Strand: +
| Region | Start | End |
| gene | 324385 | 330487 |
| mRNA | 324385 | 330487 |
| exon | 324385 | 326246 |
| exon | 326879 | 326939 |
| exon | 327103 | 327216 |
| exon | 327640 | 327771 |
| exon | 327878 | 327982 |
| exon | 328101 | 328489 |
| exon | 328602 | 328701 |
| exon | 328799 | 328858 |
| exon | 329323 | 330487 |
| CDS | 326185 | 326246 |
| CDS | 326879 | 326939 |
| CDS | 327103 | 327216 |
| CDS | 327640 | 327771 |
| CDS | 327878 | 327982 |
| CDS | 328101 | 328489 |
| CDS | 328602 | 328701 |
| CDS | 328799 | 328858 |
| CDS | 329323 | 329622 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF14389.5 | Lzipper-MIP1 | 65 | 112 |
| PF04784.13 | DUF547 | 300 | 336 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.