PH01000072G1200's details annotation
1.Annotation
ICBR annotation: jacalin-like lectin domain containing protein, expressed
Blast result AT1G19715 : 4.00E-122
Blast annotation: Mannose-binding lectin superfamily protein
2.Location
Scaffold: PH01000072
Strand: -
| Region | Start | End |
| gene | 953668 | 961961 |
| mRNA | 953668 | 961961 |
| exon | 953668 | 955726 |
| exon | 955996 | 956211 |
| exon | 956357 | 956698 |
| exon | 956773 | 957015 |
| exon | 957136 | 957582 |
| exon | 958192 | 961961 |
| CDS | 955424 | 955726 |
| CDS | 955996 | 956211 |
| CDS | 956357 | 956698 |
| CDS | 956773 | 957015 |
| CDS | 957136 | 957582 |
| CDS | 958192 | 958260 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000507 | iron-sulfur cluster binding, electron carrier activity, iron ion binding, endonuclease activity, cellular metabolic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01419.16 | Jacalin | 12 | 100 |
| PF01419.16 | Jacalin | 202 | 331 |
| PF01419.16 | Jacalin | 389 | 518 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.