PH01000072G1500's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT5G16300 : 0.00E+00
Blast annotation: Vps51/Vps67 family (components of vesicular transport) protein
2.Location
Scaffold: PH01000072
Strand: +
| Region | Start | End |
| gene | 1116749 | 1124651 |
| mRNA | 1116749 | 1124651 |
| exon | 1116749 | 1119353 |
| exon | 1119825 | 1119879 |
| exon | 1119951 | 1120027 |
| exon | 1120274 | 1120468 |
| exon | 1121750 | 1122000 |
| exon | 1122135 | 1122320 |
| exon | 1123024 | 1123201 |
| exon | 1123675 | 1124651 |
| CDS | 1117155 | 1119353 |
| CDS | 1119825 | 1119879 |
| CDS | 1119951 | 1120027 |
| CDS | 1120274 | 1120468 |
| CDS | 1121750 | 1122000 |
| CDS | 1122135 | 1122320 |
| CDS | 1123024 | 1123201 |
| CDS | 1123675 | 1123818 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001688 | CBM22 Carbohydrate-Binding_Modules GH10 Glycoside_Hydrolases CMGC_MAPK (from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08700.10 | Vps51 | 12 | 86 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.