PH01000072G1610's details annotation
1.Annotation
ICBR annotation: Regulator of chromosome condensation domain containing protein, expressed
Blast result AT1G27060 : 2.30E-51
Blast annotation: Regulator of chromosome condensation (RCC1) family protein
2.Location
Scaffold: PH01000072
Strand: -
| Region | Start | End |
| gene | 1183861 | 1187983 |
| mRNA | 1183861 | 1187983 |
| exon | 1183861 | 1184601 |
| exon | 1184683 | 1184781 |
| exon | 1185195 | 1185332 |
| exon | 1185389 | 1185520 |
| exon | 1185601 | 1185654 |
| exon | 1186238 | 1186309 |
| exon | 1186342 | 1186408 |
| exon | 1186740 | 1186769 |
| exon | 1187536 | 1187983 |
| CDS | 1184429 | 1184601 |
| CDS | 1184683 | 1184781 |
| CDS | 1185195 | 1185332 |
| CDS | 1185389 | 1185520 |
| CDS | 1185601 | 1185654 |
| CDS | 1186238 | 1186309 |
| CDS | 1186342 | 1186408 |
| CDS | 1186740 | 1186769 |
| CDS | 1187536 | 1187793 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000229 | GT2 GlycosylTransferases NuA4_histone_acetyltransferase_complex histone_H2A_acetylation protein homooligomerization, histone_H4_acetylation chromatin remodeling, negative_regulation_of_transcription,_DNA-templated RNA modification, pseudouridine synthesis, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00415.17 | RCC1 | 26 | 73 |
| PF00415.17 | RCC1 | 285 | 337 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.